Tax Services for Nonprofits

Stay compliant, build trust, and file with confidence—with tax support for IRS Federal Form 990, sales tax filing, and more.

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The Partner You Need for a Stress-Free Tax Season

At The Charity CFO, we approach tax season the same way we approach everything else—with clean records, strong systems, and a clear process.

Build Trust With Our Tax Filing Solutions

We support nonprofit tax needs in two ways:

  • For the majority of our clients—about 85%—who undergo an audit or financial review, we work directly with your outside CPA or audit firm, supplying complete, audit-ready financials for a smooth and accurate Form 990 filing.
  • For clients without year-end compliance partners, we can prepare and file Form 990 in-house—but only as part of our ongoing bookkeeping and accounting service.

We do not offer one-off or standalone tax filings. Instead, our tax services are built into a broader, year-round relationship that ensures your books are accurate and organized long before deadlines hit. That means no last-minute scrambling, no messy handoffs—and no surprises. Just confidence in your numbers and a clear path to compliance.

More Than Just a Form—We Support the Whole Process

Your tax return doesn’t exist in isolation. It’s connected to everything—bookkeeping, reconciliations, grants, payroll, and internal controls. That’s why our nonprofit tax services are built on systems that keep your financial house in order year-round.

  • Form 1099Filings Support for Nonprofits

    We make sure your contractors are properly classified and the 1099 form for your nonprofit organization is filed on time—with no surprises at year-end.

  • Sales Tax Filings

    From gift shops to special events, we handle sales tax filings and ensure you stay compliant with local and state requirements.

Skip the Tax-Time Scramble With The Charity CFO

Your tax return shouldn’t feel like a fire drill. With accurate records and our expert support, tax season becomes just another box to check. Let us simplify your nonprofit tax services from day one.

99.5%

client retention
rate

How Our Tax Preparation Services Fit Into the Bigger Picture

We don’t just help you get through tax season—we help you prepare for it all year long. During onboarding, we’ll review your previous returns and ensure your reconciliations are tight. From there, our team keeps everything organized and aligned, making your tax filings easier (and less stressful) than ever.

  • Tax Returns Begin With Clean Reconciliations: During onboarding, we review past reconciliations and returns to identify gaps and get your records in shape.

  • Aligned With Audit-Ready Standards: Our reporting and reconciliations are designed to meet the standards of auditors and the IRS—so you’re never caught off guard.

Comment Quote

The Charity CFO is a pleasure to work with … The transition went very smoothly, and we expect to actually save funds by outsourcing our finance department. The Charity CFO team is knowledgeable, professional and very responsive.

– Hal Cohen

Frequently Asked Questions About Our Nonprofit Tax Services

In many cases, yes—if you’re a current accounting client. For organizations without an audit or external CPA, we can prepare and file Form 990 in-house as part of our ongoing services.

However, most of our clients (about 85%) undergo an audit or financial review, and in those cases, we collaborate with your external CPA, providing accurate, audit-ready financials and supporting documentation for them to complete the filing.

We don’t offer Form 990 preparation as a stand-alone service. It’s one part of the comprehensive accounting support we provide to ensure year-round readiness—not just a once-a-year task.

While we don’t offer legal tax advice, our CFOs can guide you on compliance issues, best practices, and what to expect during the filing process.

Absolutely. As part of our nonprofit tax services, we help identify 1099 contractors, work with you to gather the necessary information, and file the required forms on time—so you can avoid surprises at year-end.

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Let’s make your mission easier to manage.